Heatmap: Cluster_64 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Light: 268 uE m-2 s-1
Light: 202.5 uE m-2 s-1 (Control)
Light: 135 uE m-2 s-1
Light: 67.5 uE m-2 s-1
Photoperiod: L24
Photoperiod: L20D4 (Control)
Photoperiod: L12D12
Photoperiod: L8D16
RBW: 4:1:1 (Control)
RBW: 4:1:0
RBW: 3:1:1
RBW: 3:1:0
Nitrogen: 0%
Nitrogen: 25%
Nitrogen: 50%
Nitrogen: 100% (Control)
Nitrogen: 150%
Phosphorous: 0%
Phosphorous: 25%
Phosphorous: 50%
Phosphorous: 100% (Control)
Phosphorous: 150%
Potassium: 0%
Potassium: 25%
Potassium: 50%
Potassium: 100% (Control)
Potassium: 150%
Temperature: 20°C
Temperature: 25°C (Control)
Temperature: 30°C
Temperature: 35°C
- -1.64 1.06 - -2.11 -1.13 - - - - -2.01 - 1.11 - -0.83 -0.26 -0.29 3.81 -1.16 - -0.44 0.09 2.22 - - - 0.62 - -1.81 - -0.85
Bra000292 (EXT21)
-2.15 -1.01 -1.29 -1.59 -2.09 -2.71 -1.73 -1.4 -1.51 -0.4 -1.22 -0.57 1.17 -3.88 -2.26 -0.92 -0.65 3.2 -0.76 -1.27 -1.19 -1.03 3.25 -2.69 -2.17 -1.96 -2.11 -1.58 -2.64 -1.47 -2.5
Bra000364 (UCC2)
-3.59 0.22 0.49 0.04 -0.76 -2.14 -1.27 -1.36 -1.4 -0.75 -1.2 -0.54 1.24 -1.3 -1.14 0.33 -0.06 2.72 -1.86 -1.08 -1.06 -1.09 3.13 -3.43 -2.66 -1.8 -2.72 -3.47 -2.91 -2.27 -5.35
Bra001409 (CASP2)
- - - - - - - - - - 2.61 - 4.06 - - 3.04 - - - - - - - - - - - - - - -
Bra001632 (PBPI)
- - - - - - - - - - - - 1.56 - - - - 3.88 - - - - 3.73 - - - - - - - -
Bra001666 (LEA30)
- - - - - 1.59 - - - - - - - 1.87 - - - 2.96 - 2.08 - - 3.62 - - - - - - - -
Bra002414 (PARP3)
- - - - 2.15 - - - 1.14 - - - - - -0.54 - - 3.59 - - - - 3.16 - - - - - - - 1.42
- - - - - - - - - 0.73 - - - - - - - 3.73 - - - - 3.81 - - - - - - - 1.0
Bra003273 (BG3)
-2.08 -0.36 -0.36 -1.23 -1.04 -1.01 -1.29 -1.48 -1.42 0.31 -1.33 0.02 -1.52 -1.88 -0.87 -0.79 0.1 2.96 0.95 -1.18 -1.43 0.9 2.65 -1.7 -1.63 -1.44 -1.2 -2.51 -2.6 -0.81 -2.3
Bra003824 (UGT89B1)
- -2.67 - -2.06 -0.03 0.36 -0.68 -0.44 -3.27 - - - 0.38 2.27 0.74 0.3 - 2.44 -0.81 -0.04 -3.06 -3.25 3.34 - - - - - -1.37 - -2.81
Bra004430 (TSPO)
- - - - -2.11 -0.66 -2.36 - - - -2.22 - -2.05 2.73 -0.9 - -0.08 3.36 -1.1 - - - 3.38 - - - - - - - -2.04
Bra004650 (TEB)
- - - - - - - - - - - - 2.82 - - - - 4.14 - - - - 2.64 - - - - - - - -
Bra004911 (AHL22)
- - - - - - - - - - - - 3.94 - - 3.97 - - - - - - - - - - - - - - -
- - - - - - - - - - - - 1.34 - - - - 2.64 - - - - 4.42 - - - - -0.25 - - -
Bra006222 (LEP)
- - - - - - - 2.91 1.73 - - - 2.73 - - - - 1.83 - - - - 0.94 - 1.2 - 1.88 - - 1.04 -
- - - - 2.03 0.75 - -0.27 - - -0.44 - 2.57 - - -0.01 0.91 3.21 0.53 - -0.2 1.27 -0.2 - - - - - - - -
- - - - - - - - - - - - 3.73 - - 2.77 - 3.45 - - - - - - - - - - - - -
-2.33 -1.3 1.04 -2.26 -0.02 -0.09 -1.21 - - - 0.42 -2.75 1.74 0.34 1.58 -2.4 -0.56 2.38 -0.91 - -1.74 -0.13 2.03 - -2.6 -0.33 - -0.82 -2.47 -1.57 1.44
Bra009044 (MYB92)
- - - - -0.36 - - - - - 0.54 - 2.87 - - - - 3.76 - - - -0.59 2.67 - - - - - - - -0.25
Bra009445 (KCS19)
- - - - - - -4.16 - -3.91 - -2.47 -4.0 1.78 -0.43 0.69 -1.43 -2.23 3.34 -1.47 - - -4.09 3.71 - - -2.06 - - - -3.82 -1.52
-2.57 -3.58 - - -0.49 -0.91 -1.08 -0.81 -0.47 -2.73 -0.81 -3.68 1.43 -0.53 -1.19 -1.79 -0.79 3.24 1.3 -3.49 -2.0 0.16 1.79 0.49 - 0.54 -3.58 -1.57 0.13 -0.88 -1.09
0.28 0.9 - -1.99 -3.62 - -3.66 - - -0.79 -1.69 - 2.49 - - - - 3.87 - - - - 2.27 - -2.54 - -3.6 -1.02 -2.4 -0.85 -
Bra010567 (PLT6)
- - - - - - - - - - - - 4.32 - - - - 3.46 - - - - - - - - - - - - -
-1.05 0.76 - -1.08 - -1.52 - -1.05 - - - - 2.6 - - -2.25 -2.3 2.42 - -2.46 - 0.31 3.68 -1.06 -2.46 -1.13 - - - -2.38 -2.3
- - - - -2.12 -2.28 - - -1.47 - - - 2.76 - - - -0.63 3.11 - - - - 3.7 - - - - -0.47 -2.14 -2.19 -
Bra011785 (MYB87)
- - - - 1.06 - - - 2.51 - - - 3.91 - - - - 3.03 - - - - - - - - - - - - -
Bra013124 (PR1)
- - - - - - -6.9 - - - - - 1.64 -4.69 - - - 4.28 - - - - 3.08 - - - - - -6.46 -6.64 -
Bra013520 (B70)
- - - - - - - - - - - - - - - - - 4.2 - - - - 3.66 - - - - - - - -
Bra013674 (OSM34)
0.61 1.04 0.33 -0.45 0.03 -3.49 -3.03 -0.81 0.62 -0.16 -0.09 -0.2 -4.35 -6.06 -3.64 -1.95 -1.35 2.22 0.21 -1.88 -2.05 -0.66 2.72 -0.85 -0.75 -1.1 -0.14 -1.39 -1.77 0.75 -2.62
Bra014714 (AtDOB13)
- - - - - -0.87 - - - - - - 1.73 0.3 - - - 4.07 -1.05 - - - 3.0 - - - - - -0.66 - -
-4.27 -4.26 -3.33 - -0.87 -1.78 -4.02 - -2.1 -3.84 - - -3.04 -2.86 0.3 -1.4 - 4.15 -2.98 - -2.19 - 3.24 - - - -2.59 - - - -
Bra016444 (ESC)
- - - - - - - - - - - - 2.8 - - - - 3.88 - - - - 3.09 - - - - - -0.28 - -
Bra017051 (P5CS1)
-2.18 -2.28 -2.71 -4.08 -0.51 -0.8 -1.71 -5.1 0.92 -2.03 -2.77 0.27 -1.09 0.16 -0.49 -0.4 -1.58 2.57 0.6 -1.11 -2.57 -1.97 3.14 0.02 -0.37 -3.78 -1.32 -1.53 -2.35 -2.65 0.79
Bra017113 (LP2)
-3.9 -2.75 -1.58 -2.73 -0.78 -1.16 -0.41 0.16 -0.98 0.06 -2.95 -0.99 1.58 0.38 0.28 0.68 -1.59 2.72 -0.04 -1.54 -2.62 -2.28 1.8 -0.27 0.33 -0.29 0.14 -1.27 -1.91 -2.05 0.15
Bra017677 (SAUR1)
- -2.1 - - -0.48 -1.66 -3.53 -3.07 0.85 0.66 1.0 0.52 1.95 -1.77 -1.87 0.92 -1.11 -3.18 0.26 0.66 0.48 0.8 -0.11 -0.95 -1.13 2.04 0.38 -1.1 -0.88 -0.13 -0.65
- - - - - - - - - - - - 2.29 - 2.4 - - 3.04 - - - - 3.66 - - - - - - - -
Bra018505 (ESL3.03)
- - - - - - - - -2.3 0.17 - -0.8 1.59 - - -1.0 -1.06 3.3 1.27 -1.14 - 0.34 3.31 - -1.14 - - - - - -0.37
- - - - - - - - - - - - 4.36 - - 3.39 - - - - - - - - - - - - - - -
- - - - - - - 1.87 - - 2.07 - 4.2 - - 2.26 - - - - - - - - - - - - - - -
Bra019189 (AtRbohG)
-4.3 -0.21 - -1.49 -1.45 -1.43 -0.89 -3.6 -2.92 1.76 -0.51 -1.56 -0.1 - -0.27 -0.02 0.23 3.28 -1.51 -2.7 - 1.27 2.47 -3.84 -2.44 -2.13 -1.16 - -4.52 -0.67 -2.9
Bra019355 (AHL24)
- - - - 1.76 - - - - - - - 3.15 - - 2.72 0.19 - - 0.18 - - 0.17 - - - - 1.34 1.87 0.31 0.41
Bra019948 (Nog1-2)
-0.14 - - -0.55 - 0.04 -1.05 - - - -1.5 - 0.22 - - -1.31 -2.36 3.02 - - -2.65 -2.7 4.01 -1.64 -2.51 -1.59 - - -1.32 - -
Bra021612 (PCK1)
- - - - - - - - - - - - 1.33 - - - - 4.0 - - - - 3.64 - - - - - - - -
Bra021800 (CAP-H)
-1.09 -1.97 -1.71 -0.77 0.3 -1.02 -0.73 -1.67 -0.24 0.68 -0.17 -0.76 2.04 -0.41 -0.0 0.73 -1.77 2.16 -0.73 -1.13 0.19 -0.34 1.87 -0.3 0.24 -3.26 -2.84 -0.88 -2.66 -1.51 -0.79
- - - - - - - -0.42 - - - - - - - - - 4.37 - - - - 3.27 - - - - - - - -
-0.39 -0.09 -0.03 -0.34 0.06 -0.33 -0.33 0.07 -0.7 -0.16 -0.53 -0.44 0.02 0.06 0.0 0.08 -0.09 2.34 -0.45 -0.47 -0.2 -0.41 1.02 -0.41 -0.48 -0.47 -0.48 -0.6 -0.55 -0.52 -0.44
- - - - -0.73 - 0.04 - -0.83 -0.78 -0.89 - 2.77 - - -0.39 0.4 3.01 - - - - 0.39 2.07 0.3 - - -0.57 - 0.38 1.0
Bra022584 (RD29B)
-1.58 -2.7 -2.18 -2.03 -0.16 -0.16 -1.75 -1.54 -2.54 -2.43 -2.27 -2.47 -1.97 1.64 0.81 -1.76 -1.26 2.73 -1.98 -1.64 -1.37 -2.56 3.26 -0.94 -0.97 -1.88 -1.06 -1.01 -1.23 -1.68 -0.64
Bra022761 (SWEET10)
- - - - - - - - - - - - 2.71 - - - - 4.37 - - - - 1.93 - - - - - - - -
-0.02 - - - 0.95 0.78 - - -0.62 -0.5 - -1.25 -2.27 - -0.03 1.04 - 2.54 0.17 -2.27 -1.36 -0.81 3.48 -1.41 -1.37 -1.05 -2.36 -2.52 - -0.99 -
Bra023850 (CWLP)
- - - - - - - - - - - - - - - - 1.35 3.89 - - - - 3.77 - - - - - - - -
- - - - - - - 1.22 2.06 - - - 3.43 - - - - 3.17 - - - - - 2.24 - - - - - - -
- - - - - - - - - - - - 2.24 - - - -5.0 4.18 - - - - 3.02 - - - - - - - -
Bra025040 (DMP6)
- - - - - - - - - - - - - - - - - 3.48 - - - - 4.31 - - - - - - - -
Bra025300 (MYB21)
- - - - - - - - - - - - 3.01 1.88 - 2.01 - 2.7 - - - - - - - 3.13 - - - - -
Bra025606 (REN1)
-0.59 - - - 1.26 - - - - - - - 2.35 0.37 - - - 2.86 - 0.49 -0.75 -0.86 1.69 1.79 -0.48 - -0.78 -0.72 -0.72 - 1.33
0.15 -1.94 -2.32 -1.04 0.87 0.49 -0.86 -0.34 -0.47 -0.66 -1.52 -0.08 1.36 -0.17 0.0 0.68 -0.52 1.52 -0.83 0.79 - -0.14 1.17 0.22 -1.51 -1.42 -0.49 -0.03 -1.12 0.3 0.49
- - - - - - - - - - - - - - - - - 3.34 - - - - 4.38 - - - - - - - -
Bra027037 (TBL19)
- - - - 1.78 - - - - - - - 3.06 - - - - 3.98 - - - - - - 1.76 - - - - - -
-2.67 -1.76 0.31 -1.96 -5.08 -4.48 -2.68 -2.31 -2.22 -1.37 -3.32 -2.46 -0.81 -2.39 -1.8 -1.77 -1.56 4.0 -0.7 -2.58 -2.35 -1.23 2.82 -3.44 -2.28 -1.4 -2.17 -2.85 -3.22 -1.77 -2.8
Bra028311 (FBR1)
- - - - - 0.57 - 0.55 - - - - - 0.91 - - - 3.83 - - 1.62 - 3.14 - - - - - - - -
Bra029121 (RD29B)
- - -6.18 - -4.96 -4.51 -5.67 -2.43 -0.4 -2.71 -1.65 -0.76 -4.33 0.49 1.47 -2.31 -2.75 3.76 -2.04 -2.52 -2.63 -2.57 2.96 -1.96 -1.3 -1.86 -2.19 -1.75 -1.48 -1.54 -3.95
- - - - - - - - - - - - - - - - - 2.92 - - - - 4.55 - - - - - - - -
Bra031561 (UGT71C4)
-2.25 -4.99 -2.22 -3.01 0.05 -1.01 -2.41 -0.49 -0.31 -0.63 -0.87 -1.65 0.27 0.3 -0.26 -1.34 -0.54 3.09 0.09 -0.41 -1.39 -0.62 1.98 -0.66 -0.68 -0.91 -0.57 -0.29 -0.01 -0.5 0.04
Bra031653 (GUX5)
- - - - - - - - - - - - 1.58 - - - - 3.62 - - - - 3.97 - - - - - - - -
- - - - - - - - - -0.89 - -0.43 2.24 - - - 0.32 2.32 - 1.59 - - 3.93 -0.93 - - - - - - -
- - - - -0.22 - - -1.32 - -0.17 - - 2.01 - 0.1 - -0.14 3.94 - - - - 2.9 - - - - - - - -
-0.47 -3.54 -1.79 -3.73 -0.69 -0.53 -1.79 -1.63 -1.2 0.62 -1.43 -1.99 1.96 -0.69 -0.25 0.02 -0.01 2.54 -3.0 -0.77 -1.14 -0.34 2.52 -1.01 -0.76 -1.83 0.07 -0.97 -0.67 -0.55 -2.45
Bra035185 (IAA15)
- - - - -1.59 -1.7 -4.25 - -3.01 - - -2.94 2.33 1.43 1.25 -1.15 -3.91 3.4 -0.15 - - - 2.55 - -3.0 - -1.86 -1.22 -3.9 -1.59 -0.12
Bra036891 (LFG1)
- - - - -0.95 -2.08 - - - - -2.21 - - 1.38 0.25 -1.84 -0.89 3.08 - - - - 3.91 - -1.72 - -1.04 -0.16 -1.91 - -
Bra037177 (RAB18)
-2.19 -1.66 -1.86 -1.83 0.91 0.38 0.0 -1.82 -0.72 -0.63 -0.5 -1.12 -2.61 1.26 1.48 -0.44 -1.21 2.17 0.05 -1.04 -1.27 -0.52 2.53 -1.8 -1.32 -2.26 -1.22 -2.07 -1.53 -0.2 -0.31
- - - - - -1.57 - -3.35 -3.01 - - - 2.01 - - - - 3.46 - -0.99 - -2.18 3.7 - 0.08 - -2.95 -2.94 - -2.19 -3.17
- - - - - - - - - - - - 3.67 - - - - 3.96 - - - - 1.45 - - - - - - - -
- - - - - - - - - - 2.24 - 3.85 - - 2.66 - - - - - - 2.47 - - - - - - - -
- - - - - 0.35 - - - - - - 0.13 - - - - 3.99 - - - - 3.67 - - - - - - - -
- - 1.35 - - - - - - - 0.25 - 0.57 1.68 - - - 3.29 - - - - 3.38 - - -0.86 - - - 0.9 -
- - - - - - - - - - - - 2.66 - - - - 3.62 - - - - 3.63 - - - - - - - -
- - - - - - - - - - - - 2.01 - - - - 3.55 - - - - 3.93 - - - - - - - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.