Heatmap: Cluster_6 (Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Light: 268 uE m-2 s-1
Light: 202.5 uE m-2 s-1 (Control)
Light: 135 uE m-2 s-1
Light: 67.5 uE m-2 s-1
Photoperiod: L24
Photoperiod: L20D4 (Control)
Photoperiod: L12D12
Photoperiod: L8D16
RBW: 4:1:1 (Control)
RBW: 4:1:0
RBW: 3:1:1
RBW: 3:1:0
Nitrogen: 0%
Nitrogen: 25%
Nitrogen: 50%
Nitrogen: 100% (Control)
Nitrogen: 150%
Phosphorous: 0%
Phosphorous: 25%
Phosphorous: 50%
Phosphorous: 100% (Control)
Phosphorous: 150%
Potassium: 0%
Potassium: 25%
Potassium: 50%
Potassium: 100% (Control)
Potassium: 150%
Temperature: 20°C
Temperature: 25°C (Control)
Temperature: 30°C
Temperature: 35°C
- - - -21.39 - - -0.13 -3.39 0.52 - -31.82 - -2.14 - - - 1.53 1.34 - -2.32 -12.52 -9.13 4.41 - 0.28 -3.37 -25.86 -3.33 - - -
-1.41 - - - -0.25 -3.4 -1.63 - -0.22 -3.41 - -1.61 - -1.63 -0.01 -3.13 -3.18 2.19 - -1.95 -1.1 -3.09 4.29 - -1.87 -0.62 -0.97 -2.42 - - -
- - - - - - - - - - - - - - - - - - - - - - 4.95 - - - - - - - -
- - - - - 1.75 - - - - - - - - - - - - - - - - 4.79 - - - - - - - -
-0.82 - 1.45 -0.88 -0.42 - - - - - - - - -0.75 -0.73 -0.49 - - 1.41 -1.08 - - 4.28 -1.1 - -1.16 - - 0.0 - -
- - -0.82 - - - - - - - - - - - - 0.97 0.28 0.54 - - - - 4.57 - - - - - 0.99 - -
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- - - - - - - - - - - - - - - - - 1.33 - - - - 4.83 - - - - - - - -
-3.11 - - -5.15 0.41 0.13 - - -2.69 -2.25 -1.2 -1.68 -1.83 -3.74 -0.08 -2.25 -2.2 1.59 -2.26 -0.97 -0.97 -3.42 4.23 -0.71 -0.93 -0.7 -2.12 -1.46 -4.36 -2.94 -5.51
- - - - - - - - - - - - - - - - - 2.22 - - - - 4.72 - - - - - - - -
-4.52 -4.43 -4.95 -7.95 -0.96 -0.38 - - - -5.46 -5.38 -8.2 -1.31 -0.3 -0.84 -4.46 -8.34 1.98 -0.41 - -4.86 -4.03 4.47 -3.9 -4.45 -4.16 -3.32 -4.88 -2.02 -2.73 -2.98
- - - - - - - - - - - - - - - - - - - - - - 4.95 - - - - - - - -
-1.65 0.29 -0.07 -1.33 -2.07 -0.76 -0.86 -0.35 -1.54 -1.3 -1.32 -2.78 -1.0 -2.63 -0.81 -1.28 -0.16 2.13 -1.98 -1.25 -1.7 -1.6 3.45 -1.71 -0.58 -1.11 -0.95 -2.22 0.0 0.25 0.18
-3.12 -7.18 -6.28 -4.12 -1.74 -2.34 -2.82 -3.74 -1.76 -1.19 -1.4 -1.78 -2.95 -1.43 -1.02 -2.47 -2.09 2.77 -2.4 -1.64 -2.27 -1.79 4.16 -2.21 -2.41 -2.56 -1.65 -2.49 -2.5 -2.67 -3.15
-0.27 - - - - - - -0.74 -0.46 - - - - 2.21 -0.42 - - -0.7 -0.83 - - -0.34 4.03 0.25 - 0.66 -0.81 - - - 0.85
-0.55 - - -1.18 -0.03 0.95 -2.09 -1.44 -0.92 - - -1.65 0.2 0.54 -0.02 -0.19 -2.3 1.74 - - - 0.02 3.25 -1.0 -1.55 -0.52 -1.34 -1.56 -0.57 0.84 1.19
- - - - - -9.25 - - - - - - - - - - - 2.77 - - - - 4.59 - -7.72 - -8.46 -8.72 - - -
- - - - - - - - - - - - - - - - - - - - - - 4.95 - - - - - - - -
- - - - 0.64 -1.26 -4.25 - -4.13 -3.04 -2.09 -3.27 -1.08 -1.07 -0.39 -2.48 - 2.63 -4.48 - - -1.49 4.21 -1.74 -1.11 - -1.02 -4.23 - -2.32 -
- - -3.09 -2.74 -1.85 -2.29 -1.72 -2.4 -1.8 -0.64 -1.34 -2.93 -3.77 -2.73 -0.68 -0.94 -2.06 2.48 -2.37 -2.71 -2.98 -4.26 4.22 -1.97 -2.49 -2.63 -3.34 -5.02 -1.22 -0.9 -1.92
- - - - - - - - - - - - - - - - - - - - - - 4.95 - - - - - - - -
- - - - 1.2 -0.15 - - - - - - - 1.07 - - - 1.83 - - -0.32 - 3.7 - - - - - - 1.62 2.41
- - - - - - - - - - - - - - - - - - - - - - 4.95 - - - - - - - -
- - - - - - - - - - - - - - - - - 0.98 - - - - 4.86 - - - - - - - -
-0.75 0.7 -0.65 -2.91 -1.74 -1.27 -1.41 -1.57 -0.71 0.28 -0.62 -0.31 0.09 1.47 -0.77 -0.37 -2.32 1.17 -0.39 -0.6 0.07 -1.98 2.82 -1.72 -0.51 -1.87 -0.8 -1.69 0.03 -0.73 1.07
- - - -3.26 -0.31 0.28 -0.73 -0.6 -1.92 -0.81 -1.62 -0.91 -1.48 -0.92 0.17 -1.91 -1.98 1.22 -1.83 -0.85 -0.43 -0.43 3.59 -2.02 -0.93 -0.76 0.2 -3.61 0.08 0.55 0.68
- 0.04 - - -1.82 -1.89 - - - - - - - - - - - -2.05 - - - - 4.6 -0.33 - - -0.64 - - - 1.81
-0.94 - - - -1.38 -1.33 -2.83 - -1.65 -0.25 -0.54 -2.31 -0.97 0.57 -1.38 -1.4 -0.57 1.59 -3.11 -2.09 -1.74 -1.62 4.11 -1.44 -2.4 -0.85 -1.06 -4.13 -2.3 -1.8 -0.45
- - - - - - - - - - - - 2.21 - - - - 1.96 - - - - 4.49 - - - - - - - -
- - - - - -0.11 - - - - - - 0.66 2.14 - - - 2.86 - -0.28 - - 3.6 - - - - - -1.09 - 1.76
- - - - - - - - - - - - - - - - - 1.39 - - - - 4.83 - - - - - - - -
0.36 0.13 0.16 0.96 -1.83 -0.63 -1.81 -1.71 -3.11 -2.56 -1.8 -2.66 -0.94 -1.66 -3.94 -2.3 -2.58 2.11 -3.07 -2.49 -2.75 -2.02 3.92 -2.52 -1.83 -2.58 -2.36 -1.8 -1.97 -2.69 -1.52
- -1.86 -1.43 -0.64 -4.01 -3.81 - -3.56 -2.33 -0.22 -0.45 -1.27 -0.37 -2.57 -2.0 -1.32 -1.34 1.5 0.22 - -3.82 - 4.15 -2.2 -1.04 - -1.48 -1.18 -1.51 -0.36 -0.31
- - - - - - - - - - - - - - - - - - - - - - 4.95 - - - - - - - -
- - - - - - - - - - - - - - - - - - - - - - 4.95 - - - - - - - -
- - - - 0.78 0.05 - - - - - -3.38 1.15 0.42 - - - 2.59 - - -1.37 - 4.04 0.23 -1.96 - -2.13 - - - -3.33
- - - - - - - - - - - - - - - - - 0.18 - - - - 4.9 - - - - - - - -
- - - - - - - - - - - - - - - - - 2.59 - - - - 4.64 - - - - - - - -
- - - - -0.73 -1.35 -6.77 - - - -4.83 - -1.32 -1.85 -2.66 -4.36 -6.9 2.57 -3.12 - -3.6 -6.97 4.48 -3.66 -2.96 -5.91 - -6.15 -4.36 -3.99 -1.98
- - - - - - - - - - - - - - - - - 1.24 - - - - 4.68 - - - - - - - 1.61
- - - -4.63 - - - - - - - - -3.32 - - - - 2.48 - - - - 4.6 -3.08 -0.42 - - - -5.08 - -2.71
- - - - - -0.02 - - - -1.63 - -0.7 -1.25 - 0.73 -0.1 - 0.7 - - - - 4.31 - -1.54 -0.71 - - - 0.39 1.24
-1.29 - - - -0.79 -2.43 -2.57 -2.21 -1.38 -2.48 -0.11 -1.96 - -1.04 -0.51 -0.31 -2.13 1.95 -1.47 -2.14 -0.75 0.01 4.09 -2.46 -0.36 -2.45 -0.46 -1.84 -2.94 - -3.03
- - - - - - - - - - - - - - - - - - - - - - 4.78 - - 1.81 - - - - -
-0.25 -0.55 -0.78 -1.45 0.08 -0.1 -2.33 -0.61 -0.71 -0.28 -0.72 -0.86 1.1 0.15 -0.83 -0.09 -1.5 1.52 -0.86 -1.25 -0.33 -0.76 2.92 -2.18 -1.96 -0.09 -0.51 -1.32 -0.85 -0.46 0.46
- - - - - - - - - - - - - - - - - - - - - - 4.91 - - - - - - - -0.12
- - - - -3.24 - - - - - - - - -3.79 - - - 2.56 - - - - 4.64 - - - - - - - -
-6.26 - - - -4.83 -6.23 - - - - -7.88 -10.54 -4.99 -8.18 -7.71 - -9.76 2.61 -9.92 - -9.77 -7.94 4.62 -3.62 -4.07 -6.79 -8.98 -6.83 -10.7 -8.97 -6.02
-2.44 -1.77 -0.23 0.45 -2.59 -3.29 -5.48 -2.84 -5.83 -4.11 - -4.64 - - -4.49 -5.21 -3.1 -2.96 - - -5.82 -5.36 4.74 - -4.14 -2.2 -4.48 - -2.8 -2.37 -5.67
-2.27 -2.23 -1.8 -3.87 -2.36 -2.25 -3.26 -2.93 -3.22 -2.98 -4.22 -2.58 -0.06 0.78 -0.01 -1.25 -1.42 2.01 -3.27 -1.13 -4.13 -2.7 4.09 -2.26 -2.88 -4.85 -4.44 -4.63 -1.96 -0.98 0.7
- - - - 0.68 2.24 - - - - - - -0.17 -0.67 -0.63 - 0.52 - - -2.03 - -1.69 3.99 - - 0.32 1.57 - - - -1.35
- -0.64 - - -0.42 -1.68 - - -2.8 - -2.66 - -2.61 0.34 -0.53 -2.54 -2.87 1.82 -0.32 -2.79 - - 4.45 - - - - - -1.76 - -
- - - - - -0.42 - - - - - - - - - - - 3.12 - - - - 4.43 - - - - - - - -
- - - - - - - - - - - - - -0.32 - - - 2.58 -0.7 - - - 4.56 - - - - - - - -
-7.26 -5.6 -8.84 - -2.97 -2.89 -5.66 -5.3 -6.12 -6.48 -5.49 -5.49 -4.28 -1.5 -3.63 -8.1 -4.75 2.37 -2.16 -6.35 -2.72 -5.14 4.57 -2.7 -1.59 -3.77 -3.86 -4.8 -6.32 -5.44 -7.0
- -2.14 - -4.2 -1.11 -1.28 - - - - - - -0.42 0.44 1.09 - -3.6 3.11 -2.37 - - - 4.01 -1.7 -4.66 - - -3.02 - -3.07 -
-1.63 -3.77 -4.88 -3.23 -1.46 -0.96 -2.46 -4.99 -3.31 -3.05 -4.14 -5.03 -0.13 0.08 -1.03 -2.99 -4.37 2.84 -2.03 -2.59 -2.71 -4.15 4.05 -0.57 -0.77 -2.53 -1.95 -2.38 -4.23 -2.93 -4.23
- - - - - - - - -2.39 -1.59 - - 0.83 - - - - 1.63 - - - - 4.59 -1.6 -2.59 - -0.72 -1.43 - - -
- - - 0.01 - - - - - - - -0.45 - - - - - - - - - - 4.75 - - - - 1.28 - - -
- - - - - - - - - - - - - 0.51 - - - 2.29 - - - - 4.47 -0.74 0.94 - - - - - -
-2.94 -3.0 -2.67 -2.41 -1.66 -2.26 -2.4 -2.56 -1.62 -1.69 -1.87 -1.44 -0.66 -0.99 -1.14 -1.96 -1.43 2.1 -2.05 -1.85 -2.31 -2.46 4.16 -1.54 -1.39 -2.14 -2.01 -2.58 -1.64 -0.91 -0.42
- - - - - - - - - - - - - - - - - - - - - - 4.95 - - - - - - - -
- - - - - - - - - - - - - - - - - - - - - - 4.95 - - - - - - - -
-0.78 - - -1.99 0.39 -0.91 -3.96 -2.74 -3.81 -1.59 - - - 0.67 0.55 -2.76 -1.65 2.16 -2.59 -3.14 -3.18 -1.68 4.14 -4.09 -1.39 -3.94 -1.88 -3.93 -3.84 -1.25 -
- - - - - - - - - - - - - - - - - - - - - - 4.95 - - - - - - - -
-1.31 -2.95 -0.61 0.05 0.0 - -3.27 - - -1.76 - - -0.72 -0.42 -0.74 -2.1 - 2.22 -1.88 - - - 4.28 -2.33 - - - - -3.14 -1.33 -2.78
- - - - - - - - - - - - - - - - - 2.6 - - - - 4.64 - - - - - - - -
- - - - - - - - - - - - - - - - - 2.27 - - - - 4.63 - - - - - -0.07 - -1.22
- - - - - - - - - - - - 0.5 - - - - - - - - - 4.85 - - - - - -0.6 - -
- - - - - - - - - - - - - - - - - - - - - - 4.95 - - - - - - - -
- - - - - -0.41 - - - - - - 0.74 - - - - - - - - - 4.76 - 0.66 - - - - - -
- -2.58 - -2.44 -0.46 0.44 -2.9 - - - - - -1.22 -0.4 - -1.1 -1.53 2.39 - - -2.98 - 4.29 - - - -1.2 -2.01 -2.81 -1.97 -1.42
- - - - - - - - 1.9 - - - - - - - - 0.91 - - - - 4.55 - - - - - - - 0.94
- 0.63 - - - - - - - - - - - - - - - 2.03 - - - - 4.67 - - - - - - - -
- 0.66 - 0.37 -1.23 - - -1.09 -1.84 -0.49 - - 0.92 - -0.81 -1.76 -1.16 1.74 -0.56 - - -1.71 3.93 - - -2.15 - - -0.35 -0.27 0.66
- - - - - - - - - - - - - - 2.36 - - - - - - - 4.69 - - - - - - - -
- - - - - - - - - - - 0.8 - - - - - - - - - - 4.8 - - 0.47 - - - - -
-1.75 -1.84 -0.64 -0.16 -0.98 -0.65 -1.35 -1.66 -1.49 -0.71 -0.97 -1.38 -1.09 -0.18 -0.51 -1.19 -1.22 2.12 -0.57 -0.76 -0.86 -0.43 3.54 -1.19 -1.15 -0.9 -1.02 -1.61 -0.91 -0.87 -1.45
- - - - -1.03 - - - - - - -2.19 -2.01 0.58 0.16 - - 2.04 -0.09 - -2.1 - 4.44 - -1.09 - - - - - -
- - - - - -1.48 - - - - - - - - - - - 0.81 - - - - 4.74 - - - - - -0.52 0.51 -
- -0.55 - - -1.05 -2.8 -3.35 -2.08 - -3.84 -2.6 -1.65 0.6 0.99 0.78 -2.05 -2.25 2.1 - -1.56 -2.98 - 3.96 -1.87 -2.25 -3.94 -3.63 -2.42 - -0.69 0.52

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.