Heatmap: Cluster_204 (Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm))

View as: (view raw or zlog-transformed)

View using InCHLib : here ( Experimental feature, still under development)

(Values are normalized against highest expression of the row)

Gene	Light: 268 uE m-2 s-1	Light: 202.5 uE m-2 s-1 (Control)	Light: 135 uE m-2 s-1	Light: 67.5 uE m-2 s-1	Photoperiod: L24	Photoperiod: L20D4 (Control)	Photoperiod: L12D12	Photoperiod: L8D16	RBW: 4:1:1 (Control)	RBW: 4:1:0	RBW: 3:1:1	RBW: 3:1:0	Nitrogen: 0%	Nitrogen: 25%	Nitrogen: 50%	Nitrogen: 100% (Control)	Nitrogen: 150%	Phosphorous: 0%	Phosphorous: 25%	Phosphorous: 50%	Phosphorous: 100% (Control)	Phosphorous: 150%	Potassium: 0%	Potassium: 25%	Potassium: 50%	Potassium: 100% (Control)	Potassium: 150%	Temperature: 20°C	Temperature: 25°C (Control)	Temperature: 30°C	Temperature: 35°C
Lsat_1_v5_gn_0_18400.1	1.0	0.76	0.7	0.67	0.74	0.78	0.77	0.66	0.68	0.66	0.65	0.62	0.52	0.56	0.55	0.64	0.65	0.13	0.58	0.6	0.63	0.66	0.29	0.6	0.62	0.65	0.65	0.71	0.52	0.52	0.43
Lsat_1_v5_gn_0_5321.1 (PGR1)	1.0	0.82	0.78	0.74	0.57	0.64	0.73	0.74	0.74	0.71	0.73	0.75	0.64	0.55	0.58	0.71	0.74	0.08	0.68	0.7	0.71	0.69	0.17	0.71	0.69	0.7	0.72	0.75	0.6	0.57	0.41
Lsat_1_v5_gn_1_103141.1 (RER4)	0.93	0.77	0.77	0.76	1.0	0.77	0.74	0.72	0.79	0.78	0.81	0.81	0.62	0.52	0.58	0.69	0.73	0.11	0.64	0.71	0.72	0.73	0.14	0.79	0.76	0.75	0.77	0.94	0.63	0.63	0.52
Lsat_1_v5_gn_1_14260.1 (RPE)	1.0	0.84	0.81	0.8	0.75	0.7	0.68	0.69	0.72	0.72	0.75	0.76	0.59	0.56	0.55	0.6	0.64	0.14	0.76	0.64	0.64	0.66	0.23	0.69	0.67	0.62	0.66	0.78	0.61	0.62	0.45
Lsat_1_v5_gn_1_34201.1	1.0	0.68	0.63	0.6	0.66	0.6	0.59	0.59	0.6	0.58	0.56	0.62	0.43	0.28	0.38	0.5	0.56	0.03	0.49	0.53	0.56	0.56	0.04	0.53	0.53	0.54	0.54	0.74	0.43	0.37	0.22
Lsat_1_v5_gn_1_89341.1	1.0	0.86	0.83	0.8	0.74	0.7	0.66	0.66	0.82	0.77	0.78	0.78	0.57	0.73	0.65	0.65	0.67	0.12	0.65	0.67	0.72	0.7	0.22	0.7	0.71	0.71	0.75	0.73	0.68	0.68	0.67
Lsat_1_v5_gn_1_9760.1 (ATM4)	1.0	0.79	0.65	0.55	0.6	0.62	0.7	0.78	0.74	0.71	0.69	0.73	0.54	0.42	0.51	0.64	0.66	0.04	0.65	0.67	0.71	0.7	0.1	0.74	0.7	0.68	0.7	0.76	0.51	0.52	0.33
Lsat_1_v5_gn_2_103001.1 (VTE5)	1.0	0.84	0.78	0.74	0.57	0.69	0.77	0.74	0.8	0.77	0.77	0.75	0.64	0.47	0.47	0.68	0.71	0.2	0.66	0.71	0.76	0.83	0.36	0.72	0.75	0.82	0.82	0.77	0.67	0.67	0.54
Lsat_1_v5_gn_2_118741.1 (RCA)	1.0	0.99	0.92	0.85	0.67	0.67	0.91	0.85	0.89	0.87	0.88	0.86	0.63	0.54	0.68	0.86	0.85	0.06	0.82	0.81	0.83	0.8	0.11	0.79	0.79	0.75	0.75	0.77	0.79	0.81	0.63
Lsat_1_v5_gn_2_37440.1 (HDA14)	1.0	0.94	0.77	0.72	0.76	0.86	0.91	0.8	0.88	0.85	0.88	0.81	0.58	0.77	0.92	0.86	0.87	0.14	0.79	0.87	0.85	0.8	0.25	0.77	0.76	0.8	0.83	0.84	0.66	0.65	0.51
Lsat_1_v5_gn_3_10861.1 (NdhS)	0.85	0.89	1.0	0.94	0.55	0.65	0.88	0.74	0.85	0.86	0.81	0.77	0.47	0.5	0.56	0.68	0.68	0.13	0.72	0.73	0.69	0.69	0.43	0.69	0.73	0.65	0.66	0.79	0.79	0.78	0.51
Lsat_1_v5_gn_3_11160.1 (PSAD1)	0.91	0.96	0.99	0.99	0.83	0.76	0.86	0.82	0.89	0.91	0.91	0.88	0.57	0.42	0.6	0.84	0.81	0.11	1.0	0.96	0.93	0.9	0.15	0.89	0.91	0.86	0.86	0.91	0.88	0.89	0.63
Lsat_1_v5_gn_3_124261.1 (NDH18)	1.0	0.88	0.77	0.72	0.77	0.68	0.81	0.75	0.79	0.78	0.79	0.75	0.58	0.58	0.68	0.62	0.65	0.06	0.66	0.66	0.68	0.7	0.36	0.68	0.69	0.71	0.7	0.7	0.68	0.68	0.54
Lsat_1_v5_gn_3_19641.1	1.0	0.84	0.82	0.78	0.67	0.66	0.67	0.68	0.78	0.74	0.82	0.84	0.81	0.7	0.64	0.72	0.8	0.22	0.74	0.74	0.75	0.75	0.19	0.8	0.8	0.68	0.69	0.92	0.66	0.64	0.65
Lsat_1_v5_gn_3_24441.1 (GLDP1)	1.0	0.78	0.68	0.55	0.65	0.54	0.69	0.6	0.67	0.61	0.62	0.6	0.6	0.55	0.64	0.65	0.68	0.07	0.67	0.64	0.64	0.62	0.06	0.63	0.62	0.59	0.58	0.69	0.64	0.63	0.58
Lsat_1_v5_gn_3_29100.1 (PSBY)	0.83	0.89	0.99	0.96	0.58	0.53	0.75	0.71	0.96	0.97	0.96	1.0	0.64	0.46	0.56	0.8	0.85	0.11	0.88	0.9	0.89	0.85	0.1	0.87	0.86	0.85	0.82	0.84	0.8	0.85	0.66
Lsat_1_v5_gn_3_46681.1 (APX3)	1.0	0.79	0.77	0.68	0.87	0.87	0.7	0.7	0.68	0.66	0.71	0.69	0.66	0.65	0.66	0.77	0.71	0.23	0.74	0.69	0.75	0.78	0.43	0.72	0.72	0.72	0.72	0.8	0.74	0.7	0.54
Lsat_1_v5_gn_3_73300.1 (FNR1)	1.0	0.75	0.72	0.67	0.77	0.72	0.62	0.65	0.6	0.6	0.64	0.64	0.52	0.51	0.5	0.51	0.54	0.06	0.61	0.57	0.59	0.63	0.16	0.64	0.63	0.57	0.61	0.81	0.52	0.51	0.4
Lsat_1_v5_gn_4_153081.1 (APE1)	1.0	0.82	0.73	0.7	0.63	0.59	0.72	0.76	0.63	0.61	0.65	0.65	0.6	0.58	0.55	0.58	0.61	0.13	0.54	0.6	0.59	0.61	0.28	0.64	0.63	0.59	0.61	0.72	0.58	0.56	0.39
Lsat_1_v5_gn_4_153980.1 (RBCS1A)	0.89	0.81	0.85	0.87	0.59	0.56	0.83	0.79	0.99	0.97	0.92	1.0	0.73	0.51	0.63	0.89	1.0	0.06	0.93	0.98	0.91	0.85	0.11	0.92	0.89	0.85	0.88	0.83	0.74	0.82	0.66
Lsat_1_v5_gn_4_156361.1 (STM)	1.0	0.89	0.81	0.71	0.79	0.72	0.67	0.63	0.7	0.67	0.68	0.66	0.49	0.49	0.56	0.61	0.62	0.06	0.77	0.64	0.64	0.64	0.28	0.64	0.62	0.61	0.6	0.66	0.66	0.64	0.5
Lsat_1_v5_gn_5_120941.1 (GOX1)	1.0	0.77	0.72	0.66	0.55	0.67	0.7	0.67	0.68	0.64	0.68	0.69	0.63	0.41	0.46	0.64	0.68	0.06	0.6	0.63	0.69	0.68	0.16	0.69	0.69	0.67	0.66	0.75	0.54	0.56	0.39
Lsat_1_v5_gn_5_130901.1 (PSAH-1)	0.93	0.94	0.99	0.93	0.7	0.59	0.79	0.7	0.99	0.97	0.96	1.0	0.6	0.29	0.54	0.8	0.82	0.08	0.79	0.9	0.86	0.82	0.06	0.84	0.83	0.84	0.83	0.91	0.82	0.82	0.61
Lsat_1_v5_gn_5_158001.1 (GLUS)	1.0	0.91	0.82	0.74	0.62	0.62	0.74	0.69	0.69	0.67	0.7	0.72	0.76	0.6	0.52	0.63	0.71	0.06	0.64	0.6	0.63	0.66	0.24	0.67	0.67	0.63	0.61	0.73	0.62	0.71	0.63
Lsat_1_v5_gn_5_168921.1 (ALB3)	1.0	0.87	0.82	0.82	0.84	0.83	0.76	0.76	0.79	0.77	0.8	0.77	0.66	0.64	0.61	0.78	0.71	0.22	0.84	0.76	0.76	0.77	0.29	0.76	0.74	0.77	0.76	0.8	0.77	0.74	0.56
Lsat_1_v5_gn_5_34621.1	1.0	0.83	0.8	0.78	0.61	0.45	0.67	0.57	0.83	0.77	0.77	0.79	0.68	0.44	0.53	0.58	0.7	0.04	0.59	0.7	0.65	0.64	0.1	0.71	0.67	0.62	0.65	0.76	0.55	0.62	0.66
Lsat_1_v5_gn_5_61061.1 (FBN6)	1.0	0.89	0.99	0.95	0.68	0.82	0.98	0.87	0.84	0.85	0.84	0.79	0.65	0.6	0.62	0.73	0.76	0.14	0.84	0.77	0.81	0.84	0.27	0.8	0.82	0.84	0.78	0.82	0.76	0.81	0.73
Lsat_1_v5_gn_5_77601.1 (GS2)	1.0	0.87	0.83	0.8	0.48	0.58	0.78	0.66	0.81	0.79	0.83	0.86	0.76	0.29	0.36	0.71	0.79	0.05	0.64	0.73	0.77	0.77	0.03	0.78	0.79	0.76	0.73	0.87	0.57	0.64	0.47
Lsat_1_v5_gn_5_8240.1 (NDF1)	1.0	0.82	0.77	0.74	0.7	0.71	0.75	0.68	0.73	0.72	0.78	0.75	0.66	0.53	0.62	0.71	0.7	0.05	0.68	0.66	0.69	0.71	0.12	0.67	0.68	0.67	0.7	0.81	0.54	0.57	0.46
Lsat_1_v5_gn_5_90580.1	1.0	0.81	0.77	0.77	0.75	0.7	0.75	0.72	0.7	0.71	0.72	0.7	0.57	0.47	0.53	0.63	0.66	0.08	0.65	0.63	0.63	0.68	0.21	0.64	0.67	0.62	0.63	0.82	0.62	0.57	0.38
Lsat_1_v5_gn_5_9161.1	1.0	0.82	0.82	0.72	0.58	0.69	0.89	0.82	0.72	0.76	0.74	0.77	0.68	0.49	0.54	0.7	0.74	0.07	0.64	0.66	0.66	0.73	0.1	0.73	0.74	0.74	0.74	0.84	0.59	0.6	0.46
Lsat_1_v5_gn_6_17740.1 (PRK)	1.0	0.82	0.78	0.7	0.67	0.69	0.74	0.69	0.75	0.73	0.76	0.75	0.58	0.44	0.52	0.64	0.67	0.06	0.67	0.65	0.67	0.7	0.11	0.69	0.67	0.64	0.66	0.79	0.61	0.63	0.48
Lsat_1_v5_gn_6_67720.1	1.0	0.84	0.84	0.85	0.75	0.73	0.86	0.78	0.82	0.83	0.8	0.8	0.72	0.53	0.63	0.74	0.78	0.11	0.73	0.73	0.7	0.74	0.23	0.72	0.74	0.72	0.72	0.83	0.65	0.67	0.53
Lsat_1_v5_gn_6_80041.1	1.0	0.89	0.81	0.82	0.97	0.9	0.79	0.76	0.76	0.77	0.8	0.76	0.68	0.7	0.72	0.71	0.7	0.19	0.76	0.76	0.7	0.77	0.44	0.81	0.74	0.74	0.73	0.85	0.71	0.67	0.73
Lsat_1_v5_gn_6_85860.1	1.0	0.97	0.96	0.9	0.76	0.67	0.91	0.85	0.94	0.88	0.87	0.87	0.62	0.61	0.64	0.67	0.71	0.12	0.64	0.74	0.78	0.76	0.21	0.75	0.77	0.79	0.76	0.81	0.69	0.72	0.6
Lsat_1_v5_gn_6_99680.1 (FBP)	1.0	0.78	0.7	0.57	0.58	0.62	0.79	0.9	0.74	0.7	0.7	0.67	0.55	0.63	0.73	0.61	0.65	0.06	0.7	0.69	0.67	0.7	0.12	0.71	0.66	0.66	0.68	0.72	0.58	0.6	0.5
Lsat_1_v5_gn_7_16100.1 (ATPC1)	1.0	0.84	0.82	0.76	0.6	0.63	0.73	0.66	0.76	0.74	0.74	0.76	0.61	0.44	0.49	0.66	0.73	0.07	0.77	0.73	0.73	0.73	0.21	0.77	0.73	0.68	0.69	0.9	0.58	0.58	0.41
Lsat_1_v5_gn_7_65521.1 (ADG2)	1.0	0.92	0.91	0.86	0.7	0.69	0.97	0.86	0.82	0.84	0.82	0.83	0.69	0.58	0.64	0.7	0.77	0.1	0.78	0.77	0.73	0.76	0.11	0.73	0.74	0.72	0.69	0.9	0.65	0.69	0.57
Lsat_1_v5_gn_7_85921.1 (PSAO)	0.79	0.86	0.98	1.0	0.78	0.62	0.83	0.77	0.94	0.97	0.95	0.94	0.51	0.18	0.43	0.77	0.76	0.06	0.7	0.8	0.74	0.72	0.1	0.7	0.73	0.74	0.74	0.79	0.7	0.75	0.48
Lsat_1_v5_gn_7_99221.1 (LHCA3)	0.79	0.92	0.98	1.0	0.71	0.58	0.84	0.81	0.85	0.86	0.81	0.8	0.46	0.26	0.45	0.67	0.71	0.07	0.7	0.76	0.71	0.69	0.08	0.7	0.7	0.7	0.68	0.7	0.77	0.78	0.56
Lsat_1_v5_gn_8_12460.1 (EGY2)	1.0	0.76	0.8	0.93	0.65	0.6	0.56	0.68	0.79	0.76	0.88	0.9	0.79	0.4	0.43	0.62	0.67	0.15	0.69	0.68	0.65	0.7	0.09	0.81	0.74	0.67	0.75	0.94	0.52	0.61	0.64
Lsat_1_v5_gn_8_44241.1 (NdhL)	1.0	0.92	0.88	0.87	0.69	0.69	0.78	0.75	0.8	0.8	0.8	0.82	0.66	0.63	0.66	0.66	0.71	0.14	0.77	0.72	0.76	0.76	0.21	0.77	0.78	0.75	0.78	0.78	0.64	0.66	0.67
Lsat_1_v5_gn_8_61000.1	1.0	0.79	0.69	0.66	0.62	0.54	0.62	0.73	0.55	0.51	0.54	0.55	0.46	0.51	0.48	0.45	0.48	0.11	0.52	0.49	0.52	0.53	0.3	0.52	0.53	0.49	0.5	0.63	0.46	0.44	0.36
Lsat_1_v5_gn_8_99200.1 (NdhN)	1.0	0.75	0.71	0.69	0.65	0.65	0.69	0.65	0.76	0.75	0.77	0.74	0.64	0.52	0.58	0.69	0.74	0.09	0.65	0.72	0.7	0.71	0.21	0.72	0.7	0.7	0.73	0.81	0.56	0.56	0.46
Lsat_1_v5_gn_9_15700.1 (NdhV)	1.0	0.82	0.77	0.71	0.79	0.68	0.8	0.77	0.85	0.87	0.84	0.83	0.64	0.7	0.82	0.77	0.79	0.09	0.84	0.83	0.78	0.78	0.17	0.75	0.74	0.74	0.76	0.83	0.7	0.65	0.49
Lsat_1_v5_gn_9_16861.1 (PSAL)	1.0	0.85	0.88	0.85	0.81	0.68	0.77	0.76	0.86	0.86	0.85	0.91	0.67	0.41	0.54	0.72	0.79	0.08	0.77	0.83	0.79	0.76	0.17	0.87	0.81	0.77	0.79	0.88	0.68	0.67	0.49
Lsat_1_v5_gn_9_41341.1	1.0	0.89	0.84	0.74	0.83	0.73	0.64	0.66	0.68	0.61	0.7	0.64	0.57	0.6	0.61	0.62	0.58	0.17	0.71	0.64	0.66	0.63	0.3	0.6	0.6	0.64	0.64	0.73	0.69	0.58	0.45
Lsat_1_v5_gn_9_46781.1	1.0	0.87	0.88	0.92	0.83	0.78	0.86	0.84	0.87	0.9	0.87	0.88	0.7	0.57	0.67	0.83	0.84	0.14	0.89	0.79	0.8	0.77	0.31	0.82	0.84	0.77	0.76	0.88	0.74	0.71	0.53

Details

Expression values normalized per gene (using the maximum value, Green cells indicate low expression and red high. (Dark gray cells indicate missing values)