Heatmap: Cluster_67 (Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log₂ transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene	Light: 268 uE m-2 s-1	Light: 202.5 uE m-2 s-1 (Control)	Light: 135 uE m-2 s-1	Light: 67.5 uE m-2 s-1	Photoperiod: L24	Photoperiod: L20D4 (Control)	Photoperiod: L12D12	Photoperiod: L8D16	RBW: 4:1:1 (Control)	RBW: 4:1:0	RBW: 3:1:1	RBW: 3:1:0	Nitrogen: 0%	Nitrogen: 25%	Nitrogen: 50%	Nitrogen: 100% (Control)	Nitrogen: 150%	Phosphorous: 0%	Phosphorous: 25%	Phosphorous: 50%	Phosphorous: 100% (Control)	Phosphorous: 150%	Potassium: 0%	Potassium: 25%	Potassium: 50%	Potassium: 100% (Control)	Potassium: 150%	Temperature: 20°C	Temperature: 25°C (Control)	Temperature: 30°C	Temperature: 35°C
Lsat_1_v5_gn_0_30800.1	-	2.94	-	-	-0.04	-	1.12	-	-	-	-	-	-	1.2	1.23	0.18	-	-	-	-	-	-	2.05	2.2	-	-	-	-	-	1.54	1.47
Lsat_1_v5_gn_1_16580.1 (PUP3)	-	3.44	-	-	-	1.58	-	-	-	-	-	-	-	0.4	-	0.42	-	2.95	-	-	-	-	1.25	0.09	-	-	-	-	-	-	1.75
Lsat_1_v5_gn_1_18860.1	-	4.95	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_1_66040.1 (RPT1)	-	4.46	-	-	-	-	-	2.34	-	-	-	-	-	-	-	-	-	1.97	-	-	-	-	-	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_1_89920.1	-1.36	1.29	-1.4	-1.42	1.0	-0.64	-1.73	-1.49	-1.78	0.8	0.04	-	-	-1.52	1.1	-0.47	-0.65	-1.76	-0.01	-0.85	1.45	-	-	-0.13	-1.67	-0.85	-	-	1.93	1.83	1.8
Lsat_1_v5_gn_1_96481.1 (KASI)	-	4.4	-	-	-	-	-	-	-	-	-	-	-	-	1.86	-	-	2.65	-	-	-	-	-	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_2_111740.1	-	3.71	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.9	-	-	-	-	3.18	2.37
Lsat_1_v5_gn_2_111881.1 (RBCL)	1.48	2.98	-	0.45	-	-	-	-	-	-	-	-	0.22	-	-	1.0	-	3.35	-	-	-	-	-	-	-	-	0.58	-	-	-	2.04
Lsat_1_v5_gn_2_18360.1	-	3.23	-	3.12	-	2.49	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	2.86	-
Lsat_1_v5_gn_2_56400.1 (HDK)	-	4.95	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_3_105180.1 (PLA2-BETA)	-	4.64	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	2.58	-	-	-	-	-	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_3_132720.1 (LBD18)	-	2.68	-	-	-	-	-	-	-	1.96	-	-	-	-	-	-	-	-	1.71	0.68	1.62	-	1.79	0.64	-	2.62	-	-	-	0.67	-
Lsat_1_v5_gn_3_136401.1	-	2.64	-	-	1.22	-0.21	-	1.42	-	-	-	-	1.44	0.19	1.16	-	-	-	0.04	0.99	-	-	-	-	2.22	-	-	-	1.11	-	1.58
Lsat_1_v5_gn_3_35560.1 (GH9C1)	1.53	2.36	1.0	1.56	-1.37	-	-1.84	-	-0.24	-0.26	-1.96	-1.41	-1.32	-0.37	-	-2.85	0.69	2.57	-1.22	-1.58	-3.22	-	1.13	-2.13	-	-	0.36	-0.31	-1.88	-3.05	-1.25
Lsat_1_v5_gn_3_40581.1 (WIP4)	2.84	3.51	0.13	-	-	-	1.05	-	-	0.85	-	-	0.88	-	-	-	-	-	-	-	-	0.38	0.27	-	-	-	-	-	-	-	1.65
Lsat_1_v5_gn_3_49640.1 (UGT74E2)	1.28	2.13	-0.23	-1.12	-2.6	-2.94	-1.73	0.46	-2.32	-	-1.74	-2.75	0.46	-3.34	-4.38	-0.23	-0.49	2.04	-1.63	-4.6	-1.4	-1.03	0.52	-0.26	0.42	-0.2	0.85	-0.84	0.09	0.31	1.43
Lsat_1_v5_gn_3_77480.1 (ROF1)	-	4.95	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_3_77780.1 (ATPH)	-	4.09	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	3.8	-	-	-	-	-	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_3_82641.1 (CPK2)	-	4.12	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	3.77	-	-	-	-	-	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_4_12081.1 (GWD)	-	2.96	-	-	-	-	-	1.75	-	-	1.63	2.54	-	-	-	-	-	-	-	-	-	-	2.8	-	-	-	-	-	-	-	2.01
Lsat_1_v5_gn_4_123441.1 (ClpS1)	-	-	-	-	-	-	2.84	1.53	-	-	-	-	1.89	-	1.81	1.87	-	-	-	-	1.45	-	2.1	1.62	-	-	-	-	-	-	-
Lsat_1_v5_gn_4_157180.1	-	4.95	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_4_166600.1 (ERF2)	-	3.93	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	3.98	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_4_182961.1 (MYB24)	-	3.71	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.16	-	-	-	-	-	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_4_30320.1 (AtGLYI6)	-	-	2.44	-	-	-	-	-	-	2.1	-	-	-	-	-	-	-	3.24	-	1.68	-	-	-	-	-	-	-	1.78	-	-	2.38
Lsat_1_v5_gn_4_3841.1 (VGDH1)	1.89	3.62	-	-	-	-	-	-	-	-	-	-	1.55	-	-	0.11	-	0.81	2.36	-	-	-	-	-	-	0.73	1.28	-	-	-	-
Lsat_1_v5_gn_4_6280.1 (HDR)	-	2.81	-	-	-	-	3.62	-	-	-	-	-	-	-	2.73	-	-	-	-	-	2.34	-	-	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_4_67880.1 (APE2)	-	3.56	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.11	3.23	-	-	-	-	-	-	2.4	-	-	-	-	1.25	-
Lsat_1_v5_gn_4_74141.1	-	3.95	-	-	3.96	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_5_100281.1	-	4.95	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_5_190720.1 (AHL10)	-	3.83	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	2.81	3.29
Lsat_1_v5_gn_5_44781.1 (SK42)	-	3.15	-	-	-	-	-	3.94	-	-	-	-	-	-	-	-	-	-	-	-	-	-	2.76	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_6_30560.1 (MLO14)	-	4.95	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_6_77341.1 (LecRK-IX.1)	0.18	3.48	1.31	-1.75	1.13	-1.08	-	-	-3.89	-	-1.61	-1.37	-0.99	0.2	-0.51	-1.33	-1.77	0.95	-3.9	-1.01	-1.0	-3.42	0.8	-	-2.66	-1.64	-0.53	-1.11	0.3	-0.81	0.21
Lsat_1_v5_gn_6_79020.1 (DRP3B)	-	4.95	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_7_114260.1 (CRK3)	-	2.27	3.17	-	-	-	-	-	-	-	-	1.1	-	-	-	-	-	3.44	-	-	-	-	-	-	-	-	-	-	-	-	2.08
Lsat_1_v5_gn_7_47140.1	-	2.03	-	-	-	-	-	1.87	-	-	-	-	-	-	-	-	-	-	1.33	-	2.1	-	-	-	-	-	-	-	2.79	3.26	-
Lsat_1_v5_gn_7_49561.1	1.96	3.37	1.79	1.5	1.26	1.11	-0.29	-	-	-	-	-	-1.81	-	-	-1.67	-	-0.98	-0.07	-	-2.07	-	-	-2.03	-	0.31	-1.74	-	-	-0.36	-1.92
Lsat_1_v5_gn_7_57901.1 (HKT1)	-	1.76	1.81	2.31	-	-	-	0.23	-0.38	-1.92	0.89	2.05	-	-	-0.64	0.0	0.65	-1.91	-	0.07	-2.05	-	0.76	-	0.4	-	-1.61	-0.48	-	0.4	-0.28
Lsat_1_v5_gn_7_84241.1	-	3.53	-	-	-	-	2.56	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	3.43	-	-	-	1.47	-
Lsat_1_v5_gn_7_8620.1 (PRR1)	-	3.93	-	-	-20.18	-0.53	1.28	-	0.62	-1.31	-	-	-	-	-0.44	-	-	-	-	-	3.03	-	-	-	-	-	-	-	0.83	-	-
Lsat_1_v5_gn_7_94160.1	-	2.11	-	-	1.74	-	-	-	0.37	1.79	-	-	-	-	-	-	-0.68	2.04	-	-0.75	0.28	-	2.76	-	-0.61	-	-	-0.81	-	1.62	-0.09
Lsat_1_v5_gn_8_160121.1 (DOF4.7)	-	3.25	-	1.86	-	1.45	-	-	-	-	-	-	0.55	0.7	0.66	-	-	-	-	-	-	-	3.39	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_8_4400.1 (UGT74D1)	-	2.75	2.65	-	-	-	-	-	-	-	-	-	-	-	-	-	-	3.55	-	-	-	-	2.65	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_8_67261.1 (XTR6)	3.04	4.07	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	2.57	-	-	-	-	-	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_8_77880.1 (PSBB)	-	2.77	-	-	-	-	-	-	-	3.23	-	-	-	2.46	-	-	-	-	-	-	2.14	-	-	2.29	-	-	-	-	-	-	-
Lsat_1_v5_gn_9_26120.1 (IMB3)	-	4.95	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_9_96941.1	-	4.95	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.