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Aliases : TRM4f, NOP2C, AtTRM4f
Description : NSUN-group-IV rRNA methyltransferase
Gene families : OG0000312 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000312_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_4_26360.1 | |
| Cluster | Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_155 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003723 | RNA binding | IEA | Interproscan |
| MF | GO:0008168 | methyltransferase activity | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000287 | magnesium ion binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0001522 | pseudouridine synthesis | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0003677 | DNA binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0003684 | damaged DNA binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0003697 | single-stranded DNA binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0003909 | DNA ligase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0003910 | DNA ligase (ATP) activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0003922 | GMP synthase (glutamine-hydrolyzing) activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0004749 | ribose phosphate diphosphokinase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0005524 | ATP binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| CC | GO:0005643 | nuclear pore | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0006177 | GMP biosynthetic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0006259 | DNA metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0006281 | DNA repair | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0006289 | nucleotide-excision repair | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0006310 | DNA recombination | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0006606 | protein import into nucleus | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0006753 | nucleoside phosphate metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0006913 | nucleocytoplasmic transport | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0006950 | response to stress | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0006974 | DNA damage response | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0008252 | nucleotidase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0008253 | 5'-nucleotidase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0009117 | nucleotide metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0009123 | nucleoside monophosphate metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0009124 | nucleoside monophosphate biosynthetic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0009126 | purine nucleoside monophosphate metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0009127 | purine nucleoside monophosphate biosynthetic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0009156 | ribonucleoside monophosphate biosynthetic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0009161 | ribonucleoside monophosphate metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0009165 | nucleotide biosynthetic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0009167 | purine ribonucleoside monophosphate metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0009168 | purine ribonucleoside monophosphate biosynthetic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0010498 | proteasomal protein catabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0016778 | diphosphotransferase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0016874 | ligase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0016879 | ligase activity, forming carbon-nitrogen bonds | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0016884 | carbon-nitrogen ligase activity, with glutamine as amido-N-donor | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0016886 | ligase activity, forming phosphoric ester bonds | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0016887 | ATP hydrolysis activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0017056 | structural constituent of nuclear pore | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0019637 | organophosphate metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0030163 | protein catabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0033365 | protein localization to organelle | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0033554 | cellular response to stress | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0034504 | protein localization to nucleus | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0034654 | nucleobase-containing compound biosynthetic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0042254 | ribosome biogenesis | IEP | Lactuca Sativa GO terms from Neighborhoods |
| CC | GO:0042575 | DNA polymerase complex | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0043161 | proteasome-mediated ubiquitin-dependent protein catabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| CC | GO:0043625 | delta DNA polymerase complex | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0044085 | cellular component biogenesis | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0046037 | GMP metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0046483 | heterocycle metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0046907 | intracellular transport | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0050896 | response to stimulus | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0051169 | nuclear transport | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0051170 | import into nucleus | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0051649 | establishment of localization in cell | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0051716 | cellular response to stimulus | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0055086 | nucleobase-containing small molecule metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0061608 | nuclear import signal receptor activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| CC | GO:0061695 | transferase complex, transferring phosphorus-containing groups | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0072594 | establishment of protein localization to organelle | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0090407 | organophosphate biosynthetic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0140097 | catalytic activity, acting on DNA | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0140104 | molecular carrier activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0140142 | nucleocytoplasmic carrier activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| CC | GO:0140513 | nuclear protein-containing complex | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0140658 | ATP-dependent chromatin remodeler activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:1901293 | nucleoside phosphate biosynthetic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:1901565 | organonitrogen compound catabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| No external refs found! |