Sequence Description Alias PCC hrr Bra015826 protein involved in PS-II assembly *(LQY1). protein disulfide isomerase *(LQY1) LQY1 0.9155969029953916 1 Bra014755 protein involved in PS-II repair *(PPL1) PPL1 0.9096043958242626 2 Bra029188 assembly factor involved in RuBisCo assembly *(RAF2) ATP1, SDIRIP1, RAF2 0.8899982612387992 3 Bra020809 protein involved in PS-II assembly *(HCF244) HCF244 0.8893594895380911 7 Bra013517 component *(PsbQ) of PS-II oxygen-evolving center PSBQ-1, PSBQA, PSBQ 0.8750560878856876 5 Bra001747 phosphoglycerate dehydrogenase. EC_1.1 oxidoreductase acting on CH-OH group of donor 3-PGDH, PGDH3 0.8687585467233597 6 Bra016134 protein involved in PS-II assembly *(Psb33) PSB33, LIL8 0.8625172618891577 7 Bra015668 plastidial ascorbate peroxidase *(APX). EC_1.11 oxidoreductase acting on peroxide as acceptor TAPX 0.8620433414361016 8 Bra013527 assembly factor CRR9 involved in NDH complex assembly CRR9 0.8511560507897229 9 Bra028181 small subunit of ribulose-1,5-bisphosphat carboxylase/oxygenase heterodimer DEG24, RBCS2B 0.8494566790637685 10 Bra026948 EC_1.2 oxidoreductase acting on aldehyde or oxo group of donor. glyceraldehyde 3-phosphate dehydrogenase *(GAPDH) GAPA-2 0.8478058266853836 11 Bra013314 component *(CHLI) of magnesium-chelatase complex. EC_6.6 ligase forming nitrogen-metal bond CHL11, CH-42, LOST1, CH42, CHLI-1, CHLI1 0.8477718060894287 19 Bra000687 subunit delta of peripheral CF1 subcomplex of ATP synthase complex PDE332, ATPD 0.8456760906941212 13 Bra003221 EC_3.1 hydrolase acting on ester bond. sedoheptulose-1,7-bisphosphatase SBPASE 0.8451120538068772 14 Bra016017 not classified 0.8402739603384767 15 Bra039115 peptidyl-prolyl cis-trans isomerase *(CYP37/CYP38). EC_5.2 cis-trans-isomerase. protein involved in PS-II assembly *(CYP38) CYP38, ATCYP38 0.8381397947437658 16 Bra007750 component *(PetM/VII) of cytochrome b6/f complex PetM 0.8367397495853307 17 Bra025431 small subunit of ribulose-1,5-bisphosphat carboxylase/oxygenase heterodimer DEG24, RBCS2B 0.8343690189420033 20 Bra009299 protein involved in photoprotection *(MPH1) MPH1 0.8331762709465098 19 Bra022369 component *(Tic62) of inner envelope TIC translocation system. protein involved in ferredoxin-NADP oxidoreductase membrane-tethering *(TIC62) Tic62, AtTic62 0.8304129998141656 20 Bra033412 protein involved in PS-II assembly *(Psb27) PSB27 0.8300565174776964 24 Bra033287 not classified 0.8243309011374416 22 Bra029140 assembly factor CRR1 involved in NDH complex assembly CRR1 0.8196330744906954 25 Bra016672 not classified FNRL 0.8158609485379601 24 Bra015850 component *(bL31c) of large plastid ribosomal-subunit proteome emb2184 0.8136911496059243 25 Bra034927 glyceraldehyde 3-phosphate dehydrogenase *(GAPDH). EC_1.2 oxidoreductase acting on aldehyde or oxo group of donor GAPB 0.8133141322255532 26 Bra024139 atypical thioredoxin *(ACHT) ACHT2 0.8120445616996008 27 Bra035392 plastidial glutamine synthetase *(GLN2). EC_6.3 ligase forming carbon-nitrogen bond GLN2, GS2, ATGSL1 0.8113285475496931 28 Bra005037 component *(PnsL1) of NDH lumen subcomplex L PnsL1, PPL2 0.8100286306943173 29 Bra018849 not classified 0.8086094241084313 30 Bra020772 not classified 0.8068387704928108 31 Bra020978 protein involved in PS-II assembly *(PAM68) PAM68 0.8061497479651814 32 Bra018617 basal Sigma-type transcription factor SIGA, SIGB, ATSIG1, ATSIG2, SIG1, SIG2, ABC1 0.8059809834234005 42 Bra014681 not classified PPD6 0.8031699027079371 54 Bra015315 not classified 0.7992926749825017 35 Bra015164 not classified 0.795441253273379 36 Bra036739 LHC-related protein *(OHP2) OHP2 0.79529785917666 37 Bra039342 EC_2.7 transferase transferring phosphorus-containing group. phosphoglycerate kinase. phosphoglycerate kinase PGKp1, PGK1 0.793274997515205 38 Bra025305 component *(bL12c) of large plastid ribosomal-subunit proteome RPL12-A, RPL12 0.7923438911623261 39 Bra031147 regulatory protein *(THF1) of thylakoid biogenesis THF1, PSB29 0.7875795178964465 40 Bra039227 component *(bL35c) of large plastid ribosomal-subunit proteome PRPL35 0.7874831557652026 42 Bra039091 component *(bS21c) of small plastid ribosomal-subunit proteome GHS1, LPE2, RPS21 0.7871563889569938 65 Bra027877 glutamyl-tRNA reductase *(HEMA). EC_1.2 oxidoreductase acting on aldehyde or oxo group of donor HEMA1, GluTR, AtHEMA1 0.7869381087189069 43 Bra025812 plastocyanin electron carrier PETE2, DRT112 0.7869309810377031 44 Bra010351 glutaredoxin GrxC5 0.7868195316408602 45 Bra016522 linker protein *(LHCa6) between PS-I complex and NDH complex LHCA2*1, Lhca6 0.7866851083402956 53 Bra014841 EC_3.1 hydrolase acting on ester bond. fructose-1,6-bisphosphatase HCEF1, cfbp1 0.7842652335830609 47 Bra037439 isoleucine-tRNA ligase. EC_6.1 ligase forming carbon-oxygen bond OVA2 0.7808647785965448 48 Bra012595 EC_6.6 ligase forming nitrogen-metal bond. component *(CHLI) of magnesium-chelatase complex CHL11, CH-42, LOST1, CH42, CHLI-1, CHLI1 0.7792565047588007 49 Bra007655 EC_5.2 cis-trans-isomerase. peptidyl-prolyl cis-trans isomerase ROC4, CYP20-3 0.77920366643297 62 Bra014106 component *(cpSRP43) of thylakoid membrane SRP insertion system CAO, CPSRP43 0.779021326728245 51 Bra017269 mTERF-type transcription factor mTERF 3, EMB3114, SL1 0.7779007296282647 52 Bra034863 delta-12/delta-15 fatty acid desaturase FAD7, AtFAD7, FADD 0.7769460517307816 53 Bra027294 Rab GTPase-activating protein *(RabGAP10). uroporphyrinogen III decarboxylase *(HEME). EC_4.1 carbon-carbon lyase 0.7766002879753159 54 Bra035883 plastidial nitrite transporter *(NITR2) AtNITR2;1 0.773571540135728 55 Bra038092 carotenoid hydroxylase. EC_1.14 oxidoreductase acting on paired donor with incorporation or reduction of molecular oxygen CYP97B3 0.7735653681822239 56 Bra018565 endoribonuclease *(CSP41) CRB, CSP41B, HIP1.3 0.772958321287645 57 Bra007282 component *(cL37) of large plastid ribosomal-subunit proteome PSRP5 0.7714735524541108 94 Bra027235 peptidyl-prolyl cis-trans isomerase *(CYP37/CYP38) 0.7706296636037756 62 Bra003524 MPBQ-methyltransferase *(VTE3). MSBQ-methyltransferase *(APG1) E37, VTE3, IEP37, APG1 0.7680712583817249 60 Bra037389 protein involved in ferredoxin-NADP oxidoreductase membrane-tethering *(TROL) TROL 0.7678673416906729 61 Bra003176 component *(bL17c) of large plastid ribosomal-subunit proteome PRPL17 0.7673593241221676 70 Bra030514 protein involved in PS-II assembly *(LPA1) LPA1 0.7670098016237096 63 Bra016889 not classified 0.7663821940313756 64 Bra027754 manganese/calcium cation transporter *(BICAT) BICAT1, PAM71, CCHA1 0.7663813574118106 65 Bra027021 translation elongation factor *(EF-G) ATSCO1/CPEF-G, ATSCO1, SCO1 0.7663583101267909 66 Bra004989 component *(LHCb4) of LHC-II complex LHCB8, LHCB4.3 0.7637564642990142 67 Bra013013 calcium sensor *(CAS) CaS 0.763675098496756 68 Bra028406 small subunit of ribulose-1,5-bisphosphat carboxylase/oxygenase heterodimer RBCS1B 0.7634653612206082 69 Bra013847 not classified 0.7629946448681812 83 Bra040103 not classified 0.7594426133136165 72 Bra013458 translation elongation factor *(EF-Tu) SVR11, RAB8D, ATRAB8D, ATRABE1B, RABE1b 0.7573814183511572 73 Bra019797 EC_1.2 oxidoreductase acting on aldehyde or oxo group of donor. glyceraldehyde 3-phosphate dehydrogenase *(GAPDH) GAPA-2 0.7571476909278199 74 Bra038805 translation elongation factor *(EF-Tu) SVR11, RAB8D, ATRAB8D, ATRABE1B, RABE1b 0.7556890377606387 75 Bra036365 EC_1.11 oxidoreductase acting on peroxide as acceptor. atypical 2-Cys peroxiredoxin *(PrxQ) ATPRX Q, PRXQ 0.7547335153413385 76 Bra035054 component *(uL13c) of large plastid ribosomal-subunit proteome emb1473 0.7547102676639855 77 Bra033859 glycerate:glycolate transporter. glycerate:glycolate transporter *(PLGG1) AtLrgB, LrgB, PLGG, PLGG1 0.753861673897978 78 Bra030537 protein involved in PS-II assembly *(Psb27) PSB27 0.7533552321313488 80 Bra037364 component *(uL5c) of large plastid ribosomal-subunit proteome CBE1 0.7531144670061221 81 Bra026982 not classified TL20.3 0.7498540167025717 82 Bra024187 transcriptional repressor *(IAA/AUX). protein involved in PS-II assembly *(Psb28) IAA11 0.7492053121241858 83 Bra040120 ribose 5-phosphate isomerase. EC_5.3 intramolecular oxidoreductase. ribose 5-phosphate isomerase EMB3119 0.7487609091714145 84 Bra025844 peptidyl-prolyl cis-trans isomerase *(FKBP18) 0.7486975557745201 85 Bra025037 phosphometabolite transporter *(TPT/PPT/GPT/XPT). triose phosphate:phosphate translocator APE2, TPT 0.7465638981322044 87 Bra016989 EC_4.1 carbon-carbon lyase. uroporphyrinogen III decarboxylase *(HEME) HEME2 0.7450144192329728 88 Bra030268 not classified 0.744417302334265 89 Bra038377 subunit delta of peripheral CF1 subcomplex of ATP synthase complex PDE332, ATPD 0.7442172038768996 90 Bra017964 valine/leucine/isoleucine aminotransferase. EC_2.6 transferase transferring nitrogenous group. valine/leucine/isoleucine aminotransferase. branched-chain aminotransferase *(BCAT) BCAT3, ATBCAT-3 0.744081548120566 91 Bra016977 dihydroxyacetone phosphate reductase *(SFD1). EC_1.1 oxidoreductase acting on CH-OH group of donor GLY1, SFD1 0.7432359894621037 92 Bra006622 not classified 0.7428030480673672 93 Bra003053 not classified TL17 0.7420865123385076 94 Bra036258 photosynthetic acclimation MPH2 acclimation factor MPH2 0.7412874997843892 95 Bra036309 not classified MLBP1 0.7405460145123853 96 Bra039094 not classified 0.7402539879870932 97 Bra001809 component *(PsbTn) of PS-II complex PSBTN 0.7386351626136913 98 Bra007192 EC_3.1 hydrolase acting on ester bond. sedoheptulose-1,7-bisphosphatase SBPASE 0.7383027701621893 99 Bra024365 not classified 0.7379564711243626 100