Sequence Description Alias PCC hrr Bra000641 component *(SPT5) of SPT4/5 transcription elongation factor complex GTA2, SPT5-2, GTA02 0.93570884194113 2 Bra019137 not classified APUM6, PUM6 0.9237207007725158 5 Bra014161 component *(SRP54) of SRP (signal recognition particle) complex 0.921602966685461 3 Bra029068 regulatory component *(HIZ2) of adenosine N6-methyltransferase complex 0.9211324773520838 4 Bra019432 component *(HIRA) of HIRA chaperone complex HIRA 0.9196990364984139 5 Bra037299 protein factor (NERD) of non-canonical RdDM pathway NERD 0.9156568311739134 6 Bra020249 E3 SUMO ubiquitin ligase *(SIZ1) SIZ1, ATSIZ1 0.9105679943556815 9 Bra040967 not classified 0.9102829275367289 8 Bra003464 miRNA cytidylyltransferase *(NTP2/6/7/8) NTP8 0.9099561849338468 9 Bra003360 assembly factor (SAD2/EMA) of RNA-induced silencing complex (RISC) assembly 0.9094692128995939 10 Bra029530 component *(MED16) of tail module of MEDIATOR transcription co-activator complex IEN1, AtSFR6, YID1, MED16, GLH2, SFR6 0.9094138899347023 12 Bra041007 pre-mRNA-processing protein *(PRP40A/B) ATPRP40A, PRP40A 0.908810618638434 12 Bra002879 component *(CPFS6/CFIm68) of Cleavage Factor I (CF-Im) complex 0.9086588071780928 13 Bra012260 RNA helicase *(Brr2) BRR2a, emb1507, BRR2 0.9067913201066232 14 Bra025211 not classified 0.9067852100915715 15 Bra016961 deubiquitinase *(UBP5/8-11) ATUBP5, PDE323, UBP5 0.9057533755142455 16 Bra005691 EC_2.7 transferase transferring phosphorus-containing group. mRNA capping enzyme 0.9053323910934038 17 Bra001212 regulatory component *(PP4R3) of PP4 phosphatase complex. regulatory component *(PP4R3) of PP4 phosphatase complex SMEK1, PP4R3, PSY2L 0.9031805523793308 18 Bra004413 component *(MED5/MED24/MED33) of tail module of MEDIATOR transcription co-activator complex MED33B, REF4, MED5B 0.9026287470637491 28 Bra036836 protein factor (NERD) of non-canonical RdDM pathway 0.90132154764179 20 Bra019223 NADPH:cytochrome P450 reductase *(ATR). EC_1.6 oxidoreductase acting on NADH or NADPH ATR1, AR1, AtCPR1 0.9009084101237703 45 Bra028956 not classified TREPH1 0.9007295156804315 40 Bra034692 scaffold component *(VCS) of mRNA decapping complex VCS 0.8999382094253442 37 Bra017400 not classified emb1579, RSA1 0.8991958870976896 24 Bra037286 assembly factor (TRN1) of RNA-induced silencing complex (RISC) assembly. nucleocytoplasmic import karyopherin *(IMB2) ATTRN1, TRN1, IMB2 0.8983069336616913 25 Bra038685 deubiquitinase *(UBP12-13). deubiquitinase *(UBP12-13) UBP13, AtUBP13 0.8978765831457499 26 Bra036568 methylation reader Alfin of PRC1 complex AL4 0.8965094498192308 27 Bra021701 protein factor *(PRPF8/SUS2) of MAC spliceosome-associated complex SUS2, EMB177, EMB33, PRP8, EMB14 0.8962401096121446 28 Bra000126 component *(UPF2) of RNA quality control Exon Junction complex UPF2 0.8948292915308544 29 Bra027964 not classified 0.8936633677930378 54 Bra015276 splicing factor *(SMP) SMP1 0.8931905905207458 32 Bra004464 not classified 0.8918980295952464 32 Bra033534 nucleocytoplasmic transport cargo adaptor protein *(IMP-alpha) IMPA-2 0.891381594225118 33 Bra010737 E3 ubiquitin ligase *(UPL3) KAK, UPL3 0.8908920678413269 89 Bra029059 not classified 0.8906001496503966 35 Bra034172 component *(SF3B3) of splicing factor 3B complex SAP130b, AtSAP130b 0.8902554427267807 36 Bra005812 not classified EPCR2 0.8892347856670271 37 Bra018963 not classified 0.8886508699403897 38 Bra013562 RNA polymerase-II nuclear import factor *(GPN1) QQT2, GPN1 0.8884510684305333 39 Bra036074 not classified 0.8864439885903201 49 Bra023387 RNA helicase *(Prp16) PINP1, CUV, PRP16, EMB3011, FEY 0.886234649558657 41 Bra014343 not classified 0.8850621329444349 42 Bra035572 acyl-CoA:cholesterol acyltransferase. component *(EDM2) of ASI1-AIPP1-EDM2 chromatin silencing regulator complex EDM2 0.8845458772826889 56 Bra030884 regulatory RNA helicase *(RH20/RH30) of virus replication AtRH20, RH20 0.8843493033281502 44 Bra001797 deubiquitinase component *(GID6/UBP14) of GID ubiquitination complex TARANI, TTN6, PER1, DA3, ATUBP14, TNI, UBP14 0.8841714393718982 45 Bra028208 not classified 0.8840055397521542 46 Bra019452 auxiliary component *(NAA35) of NatC N-terminal acetylase complex MAK10, ATMAK10 0.8838277915313656 47 Bra032664 scaffold component *(NOT1) of mRNA deadenylation CCR4-NOT complex NOT1 0.8837747865466007 48 Bra022873 component *(RAD50) of DNA resection MRE11-RAD50-NBS1 (MRN) complex. component *(RAD50) of MRE11-RAD50-NBS1 (MRN) complex ATRAD50, RAD50 0.8828011178975413 49 Bra033218 not classified VAD1 0.8826973698943232 50 Bra005994 associated component *(HDC1) of histone deacetylase machineries HDC1, RXT3-like 0.8825459795744351 51 Bra004551 substrate adaptor *(LRB) of CUL3-BTB E3 ubiquitin ligase complex LRB1 0.8818663610277052 52 Bra027974 not classified 0.87957816126653 67 Bra019229 not classified 0.8795458575199168 54 Bra003091 TOR-dependent regulatory protein *(TAP46) of protein phosphatase complex TAP46 0.8773480576862215 56 Bra001111 regulatory protein *(FLK) of autonomous floral-promotion pathway FLK 0.8771218115737455 57 Bra038040 CAMTA-type transcription factor CAMTA5 0.8766231259261905 82 Bra001437 histone H3K36 methylation reader *(EML) EML1, AtEML1 0.8764612369503101 60 Bra002412 not classified SCS1 0.8764487855096472 68 Bra015485 transcriptional co-activator *(BET/GTE) GTE4 0.8759722966081066 63 Bra007752 component *(SMU2) of SMU splicing factor complex SMU2 0.8758127429495808 64 Bra015118 promotor-binding component *(TFC3) of TFIIIc transcription factor complex 0.8752344540515247 65 Bra013250 regulatory protein *(COV1) of vacuolar protein sorting COV1 0.8747472389342187 66 Bra013792 not classified 0.8745778818973315 67 Bra022808 WRKY-type transcription factor WRKY21 0.8742878313961636 68 Bra040434 regulatory GTPase (MIRO) of mitochondrion fission ATCBG, MIRO2 0.8741517241667675 69 Bra013811 EC_1.6 oxidoreductase acting on NADH or NADPH. NADPH:cytochrome P450 reductase *(ATR) ATR1, AR1, AtCPR1 0.8739812515263958 70 Bra025529 transcription termination factor *(TTF1) 0.8737582130009584 71 Bra010869 component *(RINGLET/RLT) of ISWI chromatin remodeling complex RLT1, HB-1 0.8728029062262884 86 Bra012753 component *(PRL1/MAC2) of MAC spliceosome-associated complex PRL1 0.871550166257097 74 Bra012035 not classified 0.8713730699701324 75 Bra012868 protein factor (NERD) of non-canonical RdDM pathway 0.8712063794029182 76 Bra017422 ATPase component *(Etl1) CHA19, CHR19, ETL1 0.8697601053486623 78 Bra010243 beta-type-1 component *(PBA) of 26S proteasome PBA1 0.8697379008458913 79 Bra006316 scaffold component *(FRY) of RAM signalling pathway 0.869651041206929 80 Bra010976 component *(THOC2/Tho2) of mRNP trafficking THO subcomplex EMB2793, AtTHO2, THO2 0.8694327139060104 81 Bra025586 regulatory protein of RNA homeostasis C3H59, ZFWD3 0.8685382640961149 83 Bra018217 E3 UFM ubiquitin ligase UFL1 0.8684907264936207 84 Bra001802 ethylene signal transducer *(EIN3/EIL). EIL-type transcription factor AtEIN3, EIN3 0.868415959571366 85 Bra022091 Nonsense-Mediated mRNA Decay effector protein *(UPF1) UPF1, LBA1, ATUPF1 0.868414958180549 86 Bra019819 nuclear lamina lamin-like protein *(CRWN) CRWN2, LINC2 0.867997571351936 87 Bra028184 ubiquitin-proteasome shuttle factor *(RAD23) RAD23D 0.8675742381655228 88 Bra033513 M28-class carboxypeptidase 0.867352443817937 89 Bra040140 inositol phosphorylceramide glucuronosyltransferase *(IPUT1) MOCA1, PGSIP6, IPUT1 0.8672294772555316 90 Bra033894 SMARCF component *(LFR) of SWI/SNF chromatin remodeling complex LFR 0.8670158109337022 91 Bra021325 not classified 0.8669847193149764 92 Bra034288 not classified 0.8663731712362137 93 Bra008832 exine patterning factor *(NEF1) NEF1 0.8652989654235286 95 Bra023516 E4 polyubiquitination factor *(UFD2) MUSE3, UFD2 0.8652611184733233 100 Bra018674 multifunctional tRNA ligase *(RLG1) ATRNL, ZYG3, AtRLG1, RLG1, RNL 0.8647720211296896 97 Bra000600 component *(RQC2) of Ribosome-associated Quality Control (RQC) complex emb1441 0.8646924709154011 98 Bra005239 callose synthase. EC_2.4 glycosyltransferase ET2, MAS, GSL08, ATGSL08, GSL8, ATGSL8, CHOR 0.8645971297365735 99 Bra019885 cohesin cofactor *(WAPL) WAPL1, AtWAPL1 0.8644377162609985 100